emacs-orgmode@gnu.org archives
 help / color / mirror / code / Atom feed
From: "Cook, Malcolm" <MEC@stowers.org>
To: "'Charles C. Berry'" <ccberry@ucsd.edu>, 'Nick Dokos' <ndokos@gmail.com>
Cc: "'emacs-orgmode@gnu.org'" <emacs-orgmode@gnu.org>
Subject: Re: Using tramp to run R source code blocks on remote server
Date: Fri, 22 Apr 2016 18:22:02 +0000	[thread overview]
Message-ID: <78e2b06eab034e73b020ba8d08f81504@exchsrv2.sgc.loc> (raw)
In-Reply-To: <alpine.OSX.2.20.1604220854480.738@charles-berrys-macbook.local>

> On Fri, 22 Apr 2016, Nick Dokos wrote:
 > 
 > > Vikas Rawal <vikaslists@agrarianresearch.org> writes:
 > >
 > >>         I am trying to run R source code blocks on a remote server (defined in
 > my ~/.ssh/config as
 > >>         cesp).
 > >>
 > >>         I am facing several problems.
 > >>
 > >>         1.  The following sample block, when used with ":results value" does
 > not give any results.
 > >>
 > >>         #+NAME: level1
 > >>         #+begin_src R :results value :exports results :colnames yes :hline yes
 > :session cesp :dir /cesp:
 > >>         /home/vikas/
 > >>         c(1:5)
 > >>         #+end_src
 > >>
 > >>         I get the following message:
 > >>
 > >>         tramp-flush-directory-property: Wrong type argument: arrayp, nil
 > >>
 > >
 > > You might also want to ping Michael Albinus on the tramp mailing list about
 > > this.
 > >
 > 
 > 
 > And contrary to what I said earlier this *is* related to compilation. Not
 > sure if this is a tramp issue for ob-comint.el issue.

I do not trust org-reload.  If I want a fresh org environment, I quit and restart emacs.

Also, when I am playing with effect of (re)compiling org, I don't compile it with org already loaded.  I compile it in a fresh emacs.

I don't trust results gained other ways.

YMMV

 > 
 > Details:
 > 
 > If I run org-reload uncompiled, C-u C-c C-x !, code like
 > 
 > #+BEGIN_SRC R :session :dir /user@remote:/userdir
 > c(3,2,6)
 > #+END_SRC
 > 
 > runs fine and produces the expected result.
 > 
 > But reloading compiled, C-c C-x !, the code produces the
 > 
 > : tramp-flush-directory-property: Wrong type argument: arrayp, nil
 > 
 > message.
 > 
 > HTH,
 > 
 > Chuck

  reply	other threads:[~2016-04-22 18:22 UTC|newest]

Thread overview: 12+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-04-21 10:53 Using tramp to run R source code blocks on remote server Vikas Rawal
2016-04-21 16:48 ` Charles C. Berry
2016-04-21 21:29   ` Charles C. Berry
2016-04-21 22:04     ` Charles C. Berry
2016-04-21 22:20       ` Cook, Malcolm
2016-04-22  3:26   ` Vikas Rawal
2016-04-22 15:22     ` Nick Dokos
2016-04-22 16:17       ` Charles C. Berry
2016-04-22 18:22         ` Cook, Malcolm [this message]
2016-04-21 23:33 ` Tim Howes
2016-04-23  4:15 ` [PATCH] ob-comint.el bug WAS: " Charles C. Berry
2016-05-10  4:04 ` Benda Xu

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://www.orgmode.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=78e2b06eab034e73b020ba8d08f81504@exchsrv2.sgc.loc \
    --to=mec@stowers.org \
    --cc=ccberry@ucsd.edu \
    --cc=emacs-orgmode@gnu.org \
    --cc=ndokos@gmail.com \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/emacs/org-mode.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).