From: Joseph Vidal-Rosset <joseph@vidal-rosset.net>
To: "András Simonyi" <andras.simonyi@gmail.com>
Cc: org-mode-email <emacs-orgmode@gnu.org>,
John Kitchin <jkitchin@andrew.cmu.edu>
Subject: Re: citeproc-org and org-ref 3
Date: Wed, 01 Dec 2021 16:48:22 +0000 [thread overview]
Message-ID: <573b6fad-e445-3f53-9cd5-43d5b7f86904@vidal-rosset.net> (raw)
In-Reply-To: <CAOWRwxC=p7ij8DEWTOq8TYqGsZBkcLT3oYFNcnj+OKqudCppqA@mail.gmail.com>
Dear Andras,
You are very probably right. I will have a look on this entry in my
default bibliography file.
The code
(let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer)))
(org-open-file (org-html-export-to-html)))
put in .emacs.d/personal/preload/myorgexport.el
provokes the request of opening a html file, when emacs --daemon is
started; therefore I conclude that it should not be used as I did...
Anyway, every tentative to export in a bibliography in html fails at
the moment, even with a new bibliography file... :(
Best wishes,
Le 01/12/2021 à 17:33, András Simonyi a écrit :
> Dear Joseph,
>
> based on the error message there seems to be a problem with the
> 'curley-nil-on-bennet-spinoz' bibliography entry, is it possible that
> it contains a 'year = nil' row? If yes then I don't think that is
> well-formed, at least citeproc-el cannot currently parse it. Anyhow,
> apparently I need to improve/add citeproc-el error messages about
> bib(la)tex parsing, because several parsing problems have surfaced
> lately and the current error messages aren't helpful at all.
>
> best wishes,
> András
>
> On Wed, 1 Dec 2021 at 16:50, Joseph Vidal-Rosset
> <joseph@vidal-rosset.net> wrote:
>>
>> Dear John,
>>
>> I must say that to export references in html with org-ref 3, I meet a
>> lot of problems (with LaTeX, it's fine).
>>
>> I am using prelude emacs and GNU Emacs 29.0.50 .
>>
>> Starting emacs --daemon, the code
>>
>> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer)))
>> (org-open-file (org-html-export-to-html)))
>>
>> in my setup provokes this unwanting effect:
>>
>> [Prelude] Loading personal configuration files in
>> /home/joseph/.emacs.d/personal/preload...
>> Loading /home/joseph/.emacs.d/personal/preload/myorgexport.el (source)...
>> Output file:
>>
>> and with Enter :
>>
>> [Prelude] Loading personal configuration files in
>> /home/joseph/.emacs.d/personal/preload...
>> Loading /home/joseph/.emacs.d/personal/preload/myorgexport.el (source)...
>> Output file:
>> Warning (initialization): An error occurred while loading
>> ‘/home/joseph/.emacs.d/init.el’:
>>
>> Wrong type argument: stringp, nil
>>
>> To ensure normal operation, you should investigate and remove the
>> cause of the error in your initialization file. Start Emacs with
>> the ‘--debug-init’ option to view a complete error backtrace. Disable
>> showing Disable logging
>> Starting Emacs daemon.
>>
>> With --debug-init, I get:
>>
>> Debugger entered--Lisp error: (wrong-type-argument stringp nil)
>> string-to-number(nil)
>> citeproc-bt--to-csl-date("nil" nil)
>> citeproc-blt-entry-to-csl((("Url" .
>> "http://dx.doi.org/10.1163/9789004246638_005") ("Doi" .
>> "10.1163/9789004246638_005") ("Date_added" . "Mon May 16 19:09:37 2016")
>> ("Booktitle" . "Spinoza: Issues and Directions") ("Series" . "Spinoza:
>> Issues and Directions") ("Year" . "nil") ("Publisher" . "Brill Academic
>> Publishers") ("Pages" . "39-52") ("Author" . "Edwin Curley") ("Title" .
>> "ON BENNETTS SPINOZA: THE ISSUE OF TELEOLOGY") ("=type=" . "InBook")
>> ("=key=" . "curley-nil-on-bennet-spinoz")) nil nil)
>> #f(compiled-function (key entry) #<bytecode
>> -0x7fcb46b5c8e80b3>)("curley-nil-on-bennet-spinoz" (("Url" .
>> "http://dx.doi.org/10.1163/9789004246638_005") ("Doi" .
>> "10.1163/9789004246638_005") ("Date_added" . "Mon May 16 19:09:37 2016")
>> ("Booktitle" . "Spinoza: Issues and Directions") ("Series" . "Spinoza:
>> Issues and Directions") ("Year" . "nil") ("Publisher" . "Brill Academic
>> Publishers") ("Pages" . "39-52") ("Author" . "Edwin Curley") ("Title" .
>> "ON BENNETTS SPINOZA: THE ISSUE OF TELEOLOGY") ("=type=" . "InBook")
>> ("=key=" . "curley-nil-on-bennet-spinoz")))
>> maphash(#f(compiled-function (key entry) #<bytecode
>> -0x7fcb46b5c8e80b3>) #<hash-table equal 665/730 0x156f8acb26b7>)
>> citeproc-hash-itemgetter-from-any(("~/Dropbox/Orgzly/reforg.bib"))
>> org-ref-process-buffer(html)
>> org-ref-csl-preprocess-buffer(html)
>> run-hook-with-args(org-ref-csl-preprocess-buffer html)
>> org-export-as(html nil nil nil (:output-file "~/test.html"))
>> org-export-to-file(html "~/test.html" nil nil nil nil nil)
>> org-html-export-to-html()
>> (org-open-file (org-html-export-to-html))
>> (let ((org-export-before-parsing-hook
>> '(org-ref-csl-preprocess-buffer))) (org-open-file
>> (org-html-export-to-html)))
>> eval-buffer(#<buffer *load*-634240> nil
>> "/home/joseph/.emacs.d/personal/preload/myorgexport..." nil t) ;
>> Reading at buffer position 3196
>>
>> load-with-code-conversion("/home/joseph/.emacs.d/personal/preload/myorgexport..."
>> "/home/joseph/.emacs.d/personal/preload/myorgexport..." nil nil)
>> load("/home/joseph/.emacs.d/personal/preload/myorgexport...")
>> mapc(load ("/home/joseph/.emacs.d/personal/preload/myorgexport..."))
>> (progn (message "[Prelude] Loading personal configuration files in
>> ..." prelude-personal-preload-dir) (mapc 'load (directory-files
>> prelude-personal-preload-dir 't "^[^#.].*el$")))
>> (if (file-exists-p prelude-personal-preload-dir) (progn (message
>> "[Prelude] Loading personal configuration files in ..."
>> prelude-personal-preload-dir) (mapc 'load (directory-files
>> prelude-personal-preload-dir 't "^[^#.].*el$"))))
>> eval-buffer(#<buffer *load*> nil "/home/joseph/.emacs.d/init.el" nil
>> t) ; Reading at buffer position 4489
>> load-with-code-conversion("/home/joseph/.emacs.d/init.el"
>> "/home/joseph/.emacs.d/init.el" t t)
>> load("/home/joseph/.emacs.d/init" noerror nomessage)
>> startup--load-user-init-file(#f(compiled-function () #<bytecode
>> 0xec639179d6199fa>) #f(compiled-function () #<bytecode
>> -0x1f3c686ddc0dc635>) t)
>> command-line()
>> normal-top-level()
>>
>> It's too complicated for me.
>> org-ref version 2 with citeproc-org by Andras worked well, but now I am
>> afraid that to downgrade to org-ref 2 is not necessarily the best
>> solution. I am lost.
>>
>> Best wishes, and thanks for your help.
>>
>> Jo.
>>
>>
>> Le 30/11/2021 à 18:31, John Kitchin a écrit :
>>> See https://www.youtube.com/watch?v=rRR-5NSpKyE
>>> <https://www.youtube.com/watch?v=rRR-5NSpKyE> for an overview of what to
>>> do. basically you need a csl file that provides the style you want, and
>>> you specify it like this in the org file or in default settings. You may
>>> also need a locale file if you are not blogging in english.
>>>
>>> #+csl-style: apa-5th-edition.csl
>>>
>>> #+csl-locale: en-US
>>>
>>>
>>> You can find a basic example org file for html export with CSL at
>>> https://github.com/jkitchin/org-ref/blob/master/examples/basic-csl.org
>>> <https://github.com/jkitchin/org-ref/blob/master/examples/basic-csl.org>
>>>
>>> Here is a minimal way to export your blog file I suppose.
>>>
>>> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer)))
>>> (org-open-file (org-html-export-to-html)))
>>>
>>>
>>> John
>>>
>>> -----------------------------------
>>> Professor John Kitchin (he/him/his)
>>> Doherty Hall A207F
>>> Department of Chemical Engineering
>>> Carnegie Mellon University
>>> Pittsburgh, PA 15213
>>> 412-268-7803
>>> @johnkitchin
>>> http://kitchingroup.cheme.cmu.edu <http://kitchingroup.cheme.cmu.edu>
>>>
>>>
>>>
>>> On Tue, Nov 30, 2021 at 12:16 PM András Simonyi
>>> <andras.simonyi@gmail.com <mailto:andras.simonyi@gmail.com>> wrote:
>>>
>>> Dear Joseph,
>>>
>>> unfortunately, my note on the `citeproc-org` page has become kind of
>>> misleading and has to be updated because org-ref didn't switch to the
>>> new org-cite citation syntax after all, although this was the plan for
>>> a while. I think if you wish to use org-ref 3 then you should simply
>>> remove citeproc-org entirely -- if I understand correctly the latest
>>> version of org-ref supports the old syntax as well and is capable of
>>> CSL-based export (among others) on its own.
>>>
>>> best regards,
>>> András
>>>
>>> On Tue, 30 Nov 2021 at 18:00, Joseph Vidal-Rosset
>>> <joseph@vidal-rosset.net <mailto:joseph@vidal-rosset.net>> wrote:
>>> >
>>> >
>>> > Dear John, and dear Andras,
>>> >
>>> > Having updated my org-ref to the last version, I see that the html
>>> > export of bibliography does not work any longer for my blog.
>>> >
>>> > Reading Andras's note here
>>> > https://github.com/andras-simonyi/citeproc-org
>>> <https://github.com/andras-simonyi/citeproc-org>
>>> > I confess that I am lost.
>>> >
>>> > What have I to do to not waste too much time with this problem?
>>> >
>>> > Best wishes,
>>> >
>>> > Jo.
>>> >
>>>
>>
next prev parent reply other threads:[~2021-12-01 16:50 UTC|newest]
Thread overview: 21+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-11-30 17:00 citeproc-org and org-ref 3 Joseph Vidal-Rosset
2021-11-30 17:16 ` András Simonyi
2021-11-30 17:24 ` Joseph Vidal-Rosset
2021-11-30 17:31 ` John Kitchin
2021-11-30 18:15 ` Joseph Vidal-Rosset
2021-12-01 15:49 ` Joseph Vidal-Rosset
2021-12-01 16:33 ` András Simonyi
2021-12-01 16:48 ` Joseph Vidal-Rosset [this message]
2021-12-01 22:16 ` John Kitchin
2021-12-02 13:17 ` Joseph Vidal-Rosset
2021-12-02 15:56 ` Joseph Vidal-Rosset
2021-12-02 17:35 ` John Kitchin
2021-12-03 8:04 ` Joseph Vidal-Rosset
2021-12-03 15:24 ` John Kitchin
2021-12-03 16:48 ` Joseph Vidal-Rosset
2021-12-03 17:13 ` John Kitchin
2021-12-04 14:23 ` Max Nikulin
2021-12-04 14:45 ` Joseph Vidal-Rosset
2021-12-04 15:07 ` John Kitchin
2021-12-04 15:31 ` Joseph Vidal-Rosset
2021-12-01 22:08 ` John Kitchin
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