From: Rainer M Krug <Rainer@krugs.de>
To: John Hendy <jw.hendy@gmail.com>, emacs-orgmode <emacs-orgmode@gnu.org>
Subject: [BABEL] BUG Re: Omitting try/catch blocks from tangled R code?
Date: Fri, 07 Feb 2014 09:26:22 +0100 [thread overview]
Message-ID: <52F498AE.6090802@krugs.de> (raw)
In-Reply-To: <CA+M2ft9aSw-aTdu131e14MjNj+qqSOSfBY71tn5w40mhfbBEoQ@mail.gmail.com>
[-- Attachment #1: Type: text/plain, Size: 2255 bytes --]
On 02/07/14, 07:18 , John Hendy wrote:
> Greetings,
>
>
> I don't usually tangle, but am creating a code file to go along with a
> presentation I'm giving this weekend so that attendees can try things
> out afterward by cloning my github repo where all the data and
> necessary files are stored.
>
> In my presentation (Beamer), I create plots via the R pdf() device,
> and noticed that all of the tangled code where plots are generated
> contains the following:
>
> pdf(file="file.pdf"); tryCatch({
>
> code block contents here
>
> },error=function(e){plot(x=-1:1, y=-1:1, type='n', xlab='', ylab='',
> axes=FALSE); text(x=0, y=0, labels=e$message, col='red');
> paste('ERROR', e$message, sep=' : ')}); dev.off()
>
> Is there a way to omit this?
This is a bug which must have been introduced some time ago - in the
stock version of emacs (Org-mode version 7.9.3f
(release_7.9.3f-17-g7524ef @
/usr/local/Cellar/emacs/24.3/share/emacs/24.3/lisp/org/)) it does not
tangle the enclosing commands to create graphics, but in 8.2 it does (I
don't have an older version at hand to go further back).
>
> I'm guessing this is here to create a blank plot with the error as the
> output when something goes awry?
Yes.
>
> I checked around variable completions of org-babel-tangle-* and
> searched google for terms like "org babel tangle try catch" but am not
> finding anything that looks like what I need.
There is nothing, as it should not be tangled. The enclosing commands
concern the export, but not tangling,
I agree that the :result graphics header argument caused commands should
not be in the tangled file.
Another question is about the :epilogue and :prologue which I think
should be present (haven't checked if they are...).
Cheers,
Rainer
>
>
> Thanks,
> John
>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
[-- Attachment #2: OpenPGP digital signature --]
[-- Type: application/pgp-signature, Size: 560 bytes --]
next prev parent reply other threads:[~2014-02-07 8:26 UTC|newest]
Thread overview: 25+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-02-07 6:18 Omitting try/catch blocks from tangled R code? John Hendy
2014-02-07 8:26 ` Rainer M Krug [this message]
2014-02-07 16:47 ` [BABEL] BUG " Eric Schulte
2014-02-07 19:22 ` Rainer M Krug
2014-03-12 1:13 ` John Hendy
2014-03-17 15:00 ` Eric Schulte
2014-03-17 17:11 ` John Hendy
2014-03-17 17:44 ` Eric Schulte
2014-03-18 8:44 ` Rainer M Krug
2014-03-18 21:56 ` John Hendy
2014-03-19 19:07 ` Charles Berry
2014-03-20 4:57 ` Eric Schulte
2014-03-20 9:22 ` Rainer M Krug
2014-03-24 2:03 ` Eric Schulte
2014-03-24 10:22 ` Rainer M Krug
2014-03-24 13:16 ` Eric Schulte
2014-03-25 9:37 ` Rainer M Krug
2014-03-26 20:17 ` Eric Schulte
2014-03-28 8:32 ` Rainer M Krug
2014-03-28 8:51 ` Rainer M Krug
2014-03-30 14:19 ` Eric Schulte
2014-03-31 7:52 ` Rainer M Krug
2014-04-02 23:09 ` Eric Schulte
2014-04-07 7:59 ` Rainer M Krug
2014-04-11 2:35 ` Eric Schulte
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=52F498AE.6090802@krugs.de \
--to=rainer@krugs.de \
--cc=emacs-orgmode@gnu.org \
--cc=jw.hendy@gmail.com \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).