From: Rainer M Krug <r.m.krug@gmail.com>
To: Eric Schulte <eric.schulte@gmx.com>
Cc: emacs-orgmode <emacs-orgmode@gnu.org>
Subject: Re: [babel] [bug] bug in R-specific header argument for graphics driver
Date: Mon, 19 Mar 2012 15:35:07 +0100 [thread overview]
Message-ID: <4F67441B.4050203@gmail.com> (raw)
In-Reply-To: <87ty1kad5k.fsf@gmx.com>
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On 19/03/12 15:17, Eric Schulte wrote:
> Hi Rainer,
>
> I see you CC'd me on this email. I personally do not know anything about how the graphics
> header argument to R code blocks works.
Sorry - I thought it was part of babel, and when I hear "babel", I think "eric knows it"...
> I would recommend looking deeper into the behavior using the following tools
>
> - Look at the expanded code block body using org-babel-expand-src-block - Run the code block in
> a session, and then look into the session buffer to see what R code is being generated by
> Babel, then try to debug the R as you would normally - look into the temporary R scripts
> generated during execution, which will live in a directory with a name like /tmp/babel-XXXXXX
Good idea - I'll look into it and give you feedback.
>
> If you are able to isolate a bug in Babel then I can help fix that bug in the elisp code.
Thanks - I still haven't managed to get into (e)lisp...
>
> Thanks and sorry I can't be of more immediate,
No problem,
Cheers,
Rainer
>
> Rainer M Krug <r.m.krug@gmail.com> writes:
>
>> I did not get any response so far, so I hope that the email did not went out...
>>
>> Rainer
>>
>>
> When giving the header argument :title: the graph is not produced in a file:
>
> * This works Display boxplot of spread of Mff over time for each release strategy :PROPERTIES:
> :results: graphics :file: SpreadOverTime.pdf :width: 4 :height: 8 :pointsize: 8 :END:
> #+begin_src R plot(runif(100)) #+end_src
>
> * This doesn't Display boxplot of spread of Mff over time for each release strategy
> :PROPERTIES: :results: graphics :file: test.pdf :width: 4 :height: 8 :pointsize: 8 :title:
> "test" :END: #+begin_src R plot(runif(100)) #+end_src
>
> Error message:
>
> Error in pdf(file = "test.pdf", width = 4, height = 8, pointsize = 8, : object 'test' not
> found Calls: <Anonymous> -> <Anonymous> -> pdf Execution halted
>
> Cheers,
>
> Rainer
>
>
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys.
(Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
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next prev parent reply other threads:[~2012-03-19 14:36 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-03-19 8:55 [babel] [bug] bug in R-specific header argument for graphics driver Rainer M Krug
2012-03-19 14:17 ` Eric Schulte
2012-03-19 14:35 ` Rainer M Krug [this message]
2012-03-19 14:48 ` Eric Schulte
-- strict thread matches above, loose matches on Subject: below --
2012-03-15 12:24 Rainer M Krug
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