From: Rainer M Krug <r.m.krug@gmail.com>
To: emacs-orgmode <emacs-orgmode@gnu.org>
Subject: [BABEL] "unset" :var definitions for subtree
Date: Mon, 07 Feb 2011 16:12:44 +0100 [thread overview]
Message-ID: <4D500BEC.1080300@gmail.com> (raw)
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Hi
For one project, I am usinr org to write submit scripte to a cluster
runing torqu. The important bit in this is, that between the shebang and
the code, no other executable line must occur. As I am using variables
in org (:var) they will occur just after the shebang, which causes a
problem for torque. So, my question is, is there a way to "unset"
variables defined by using :var for a subtree?
#+BABEL: :session *R* :results output :exports both :tangle
Analysis_sensitivity.R :var RESULTSDIR="/media/Results/" :var
ANALYSISDIR="~/Documents/Projects/analysis/"
* submit script (SA.sub)
:PROPERTIES:
:tangle: ./SA.sub
:exports: code
:END:
#+begin_src sh
#PBS -j y
#PBS -M Rainer@krugs.de
#PBS -V
#PBS -l nodes=1:mem=4gb
##
cd $PBS_O_WORKDIR
#+end_src
I would need the tangled code to be :
#!/bin/bash
#PBS -j y
#PBS -M Rainer@krugs.de
#PBS -V
#PBS -l nodes=1:mem=4gb
##
cd $PBS_O_WORKDIR
But it is
#!/bin/bash
RESULTSDIR=/media/Results/
ANALYSISDIR=~/Documents/Projects/analysis/
#PBS -j y
#PBS -M Rainer@krugs.de
#PBS -V
#PBS -l nodes=1:mem=4gb
##
cd $PBS_O_WORKDIR
But RESULTSDIR and ANALYSISDIR is used in the remainder of the document
(several other subtrees)
Any help appreciated,
Rainer
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa
Tel: +33 - (0)9 53 10 27 44
Cell: +27 - (0)8 39 47 90 42
Fax (SA): +27 - (0)8 65 16 27 82
Fax (D) : +49 - (0)3 21 21 25 22 44
Fax (FR): +33 - (0)9 58 10 27 44
email: Rainer@krugs.de
Skype: RMkrug
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next reply other threads:[~2011-02-07 15:12 UTC|newest]
Thread overview: 26+ messages / expand[flat|nested] mbox.gz Atom feed top
2011-02-07 15:12 Rainer M Krug [this message]
2011-02-10 1:27 ` [BABEL] "unset" :var definitions for subtree Eric Schulte
2011-02-10 8:33 ` Rainer M Krug
2011-02-10 16:48 ` Eric Schulte
2011-02-11 9:00 ` Rainer M Krug
2011-02-11 9:32 ` Dan Davison
2011-02-11 10:22 ` Rainer M Krug
2011-02-11 11:55 ` Dan Davison
2011-02-11 12:29 ` Rainer M Krug
2011-02-11 13:49 ` Dan Davison
2011-02-11 13:56 ` Rainer M Krug
2011-02-12 22:54 ` Eric Schulte
2011-02-11 12:19 ` Dan Davison
2011-02-11 12:58 ` Rainer M Krug
2011-02-11 13:41 ` Dan Davison
2011-02-11 14:05 ` Rainer M Krug
2011-02-12 23:12 ` Eric Schulte
2011-02-13 1:21 ` Dan Davison
2011-02-13 18:28 ` Eric Schulte
2011-02-13 21:38 ` Dan Davison
2011-02-14 19:22 ` Eric Schulte
2011-02-11 14:16 ` Eric Schulte
2011-02-11 14:45 ` Dan Davison
2011-02-12 23:13 ` Eric Schulte
2011-02-13 1:38 ` Dan Davison
2011-02-13 18:33 ` Eric Schulte
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