From mboxrd@z Thu Jan 1 00:00:00 1970 From: Andreas Leha Subject: Re: source code block export no expansion Date: Wed, 08 Dec 2010 07:55:11 +0100 Message-ID: <4CFF2BCF.4030400@med.uni-goettingen.de> References: <4CFE7126.8090304@med.uni-goettingen.de> <2062CE38-02AE-48AE-A36E-92605E973FCB@tsdye.com> <4CFE81C7.8090402@med.uni-goettingen.de> <4CFE8F08.4030207@med.uni-goettingen.de> <7587B29A-EF63-4FAD-BBDD-A59FFEA769D9@tsdye.com> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="===============1488630715==" Return-path: Received: from [140.186.70.92] (port=53287 helo=eggs.gnu.org) by lists.gnu.org with esmtp (Exim 4.43) id 1PQDw7-0002nI-Ga for emacs-orgmode@gnu.org; Wed, 08 Dec 2010 01:55:37 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1PQDw5-0004e2-N5 for emacs-orgmode@gnu.org; Wed, 08 Dec 2010 01:55:35 -0500 Received: from mail2-ext.be-mrz.med.uni-goettingen.de ([134.76.124.179]:26619 helo=mail2-ext.med.uni-goettingen.de) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1PQDw4-0004cz-VB for emacs-orgmode@gnu.org; Wed, 08 Dec 2010 01:55:33 -0500 Received: from genepi110.genepi.med.uni-goettingen.de ([134.76.140.110]:51830 helo=[192.168.0.23]) by mail2-ext.med.uni-goettingen.de with esmtpsa (TLSv1:AES256-SHA:256) (Exim 4.69) (envelope-from ) id 1PQDvy-0003pK-2b for emacs-orgmode@gnu.org; Wed, 08 Dec 2010 07:55:26 +0100 In-Reply-To: <7587B29A-EF63-4FAD-BBDD-A59FFEA769D9@tsdye.com> List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org This is a cryptographically signed message in MIME format. --===============1488630715== Content-Type: multipart/signed; protocol="application/pkcs7-signature"; micalg=sha1; boundary="------------ms000806060905090907060009" This is a cryptographically signed message in MIME format. --------------ms000806060905090907060009 Content-Type: multipart/alternative; boundary="------------060508010004070405090807" This is a multi-part message in MIME format. --------------060508010004070405090807 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Hi Tom, thanks a lot for looking into it! Fixing this is unfortunately off my limits. But for me the unnamed session is a valid work-around for me, since I do not need several sessions right now. Thanks for this hint. Cheers, Andreas Am 07.12.2010 21:14, schrieb Thomas S. Dye: > Aloha Andreas, > > Thanks for your patience and persistence. I think this might qualify > as a bug. Using your code, if I don't run R in a session, or if I run > R in a session but don't name the session, > everything works as expected. The behavior changes for me when the > session gets a name. > > All the best, > Tom > > > On Dec 7, 2010, at 9:46 AM, Andreas Leha wrote: > >> Hi Tom, >> >> thanks for the answer and thanks for spotting the typo. But even >> with the typo corrected during export the noweb links are still export= ed. >> #+srcname: mod1 >> #+begin_src R :tangle no :export code >> print("mod1") >> #+end_src >> >> #+srcname: mod2 >> #+begin_src R :tangle no :export code >> print("mod2") >> #+end_src >> >> #+srcname: part1 >> #+begin_src R :noweb tangle :tangle yes :exports code :session *R* >> <> >> <> >> #+end_src >> >> Result: >> ... >> \lstset{language=3DR} >> \begin{lstlisting} >> print("mod1") >> print("mod2") >> \end{lstlisting} >> ... >> >> >> >> Am 07.12.2010 20:33, schrieb Thomas S. Dye: >>> Aloha Andreas, >>> >>> On Dec 7, 2010, at 8:49 AM, Andreas Leha wrote: >>> >>>> Hi Tom, >>>> >>>> thanks for this answer. This indeed comes closer to what I want. >>>> >>>> But, some comments: >>>> >>>> (1) There seems to be an error in the manual: >>>> In the manual the :noweb tangle header argument is given as :noweb y= es, >>>> which is why I missed that option. >>> >>> I believe this is fixed at the >>> source now, but am not sure how long it will take to propagate to >>> the distributed documentation. >>> >>>> (2) The noweb link are expanded *always* (i.e. execution, export, >>>> tangle) even with the :noweb tangle option: >>>> #+srcname: mod1 >>>> #+begin_src R :tangle no :export code >>>> print("mod1") >>>> #+end_src >>>> >>>> #+srcname: mod2 >>>> #+begin_src R :tangle no :export code >>>> print("mod2") >>>> #+end_src >>>> >>>> #+srcname: part1 >>>> #+begin_src R :noweb tangle :tangle yes :export code :session *R* >>>> <> >>>> <> >>>> #+end_src >>>> >>>> >>> >>> Perhaps this has to do with using :export instead of the correct >>> header argument, :exports? >>> >>>> (3) I am looking for an option to disable the noweb link expansion >>>> during *export* only. However, as I understand it, the :noweb tangl= e >>>> header option is supposed to disable the expansion also for >>>> *execution*. >>> >>> This isn't how it works for me. :noweb tangle inhibits noweb expansi= on during export only. >>> >>>> >>>> So, is this not possible right now? >>>> >>> >>> It is possible now. If the :exports header argument doesn't fix >>> your problem, come back to the list. >>> >>> All the best, >>> Tom >>> >>>> Cheers, >>>> Andreas >>>> >>>> >>>> >>>> Am 07.12.2010 19:37, schrieb Thomas S. Dye: >>>>> Aloha Andreas, >>>>> >>>>> Perhaps :noweb tangle will do what you want. >>>>> >>>>> hth, >>>>> Tom >>>>> >>>>> On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote: >>>>> >>>>>> Hi all, >>>>>> >>>>>> I have a question about exporting source code blocks. Say, I have= >>>>>> several modules (mod1, mod2), that build a bigger part (part1) of = my >>>>>> program, e.g.: >>>>>> >>>>>> >>>>>> #+srcname: mod1 >>>>>> #+begin_src R :tangle no :export code >>>>>> print("mod1") >>>>>> #+end_src >>>>>> >>>>>> #+srcname: mod2 >>>>>> #+begin_src R :tangle no :export code >>>>>> print("mod2") >>>>>> #+end_src >>>>>> >>>>>> #+srcname: part1 >>>>>> #+begin_src R :noweb yes :tangle yes :export code :session *R* >>>>>> <> >>>>>> <> >>>>>> #+end_src >>>>>> >>>>>> >>>>>> Now during the tangling I would like to tangle just the full part1= - >>>>>> with noweb links being expanded. Also during execution the noweb >>>>>> links >>>>>> should be expanded. This is not a problem. >>>>>> >>>>>> But at the same time, during the export I'd like to export all thr= ee >>>>>> code snippets, but I'd prefer the noweb links not to be expanded. = Is >>>>>> that possible? >>>>>> >>>>>> Thanks in advance, >>>>>> Andreas >>>>>> >>>>>> _______________________________________________ >>>>>> Emacs-orgmode mailing list >>>>>> Please use `Reply All' to send replies to the list. >>>>>> Emacs-orgmode@gnu.org >>>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>>>> >>>>> >>>>> _______________________________________________ >>>>> Emacs-orgmode mailing list >>>>> Please use `Reply All' to send replies to the list. >>>>> Emacs-orgmode@gnu.org >>>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>>> >>>> --=20 >>>> Andreas Leha >>>> >>>> Universit=E4tsmedizin G=F6ttingen >>>> Abteilung Medizinische Statistik >>>> Humboldtallee 32 >>>> 37073 G=F6ttingen >>>> >>>> Tel: +49 (0)551 39-10710 >>>> Fax: +49 (0)551 39-4995 >>>> >>>> http://www.ams.med.uni-goettingen.de/amsneu/leha.html >>>> >>>> >>>> >>>> University Medical Center G=F6ttingen >>>> Department for Medical Statistics >>>> Humboldtallee 32 >>>> 37073 G=F6ttingen >>>> Germany >>>> >>>> Phone: +49 (0) 551 39-10710 >>>> Fax: +49 (0) 551 39-4995 >>>> >>>> http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html >>>> >>>> >>>> _______________________________________________ >>>> Emacs-orgmode mailing list >>>> Please use `Reply All' to send replies to the list. >>>> Emacs-orgmode@gnu.org >>>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >>> >> >> --=20 >> Andreas Leha >> >> Universit=E4tsmedizin G=F6ttingen >> Abteilung Medizinische Statistik >> Humboldtallee 32 >> 37073 G=F6ttingen >> >> Tel: +49 (0)551 39-10710 >> Fax: +49 (0)551 39-4995 >> >> http://www.ams.med.uni-goettingen.de/amsneu/leha.html >> >> >> >> University Medical Center G=F6ttingen >> Department for Medical Statistics >> Humboldtallee 32 >> 37073 G=F6ttingen >> Germany >> >> Phone: +49 (0) 551 39-10710 >> Fax: +49 (0) 551 39-4995 >> >> http://www.ams.med.uni-goettingen.de/amsneu/leha-en.html >> =20 > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode > =20 --------------060508010004070405090807 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Hi Tom,

thanks a lot for looking into it!  Fixing this is unfortunately off = my limits.

But for me the unnamed session is a valid work-around for me, since I do not need several sessions right now.  Thanks for this hint.

Cheers,
Andreas



Am 07.12.2010 21:14, schrieb Thomas S. Dye:
Aloha Andreas,

Thanks for your patience and persistence.  I think this might= qualify as a bug.  Using your code, if I don't run R in a session, o= r if I run R in a session but don't name the session, everything works as expected.  The behavior changes f= or me when the session gets a name.

All the best,
Tom


On Dec 7, 2010, at 9:46 AM, Andreas Leha wrote:

Hi Tom,

thanks for the answer and thanks for spotting the typo.  But even wi= th the typo corrected during export the noweb links are still exported.
  #+srcname: mod1
  #+begin_src R :tangle no :export code
    print("mod1")
  #+end_src

  #+srcname: mod2
  #+begin_src R :tangle no :export code
    print("mod2")
  #+end_src

  #+srcname: part1
  #+begin_src R :noweb tangle :tangle yes :exports code :session *R*=
    <<mod1>>
    <<mod2>>
  #+end_src

Result:
=2E..
\lstset{language=3DR}
\begin{lstlisting}
print("mod1")
print("mod2")
\end{lstlisting}
=2E..



Am 07.12.2010 20:33, schrieb Thomas S. Dye:
Aloha Andreas,

On Dec 7, 2010, at 8:49 AM, Andreas Leha wrote:

Hi Tom,

thanks for this answer.  This indeed comes closer to what I want.
But, some comments:

(1) There seems to be an error in the manual:
In the manual the :noweb tangle header argument is given as :noweb yes, which is why I missed that option.

I believe this is fixed at the source now, but am not sure how long&n= bsp;it will take to propagate to the distributed documentation.

(2) The noweb link are expanded *always* (i.e. execution, export,
tangle) even with the :noweb tangle option:
 #+srcname: mod1
 #+begin_src R :tangle no :export code
   print("mod1")
 #+end_src

 #+srcname: mod2
 #+begin_src R :tangle no :export code
   print("mod2")
 #+end_src

 #+srcname: part1
 #+begin_src R :noweb tangle :tangle yes :export code :session *R*    <<mod1>>
   <<mod2>>
 #+end_src



Perhaps this has to do with using :export instead of the correct header argument, :exports?

(3) I am looking for an option to disable the noweb link expansion
during *export* only.  However, as I understand it, the :noweb tangl= e
header option is supposed to disable the expansion also for *execution*.<= font class=3D"Apple-style-span" color=3D"#000000">

This isn't how it works for me.  = :noweb tangle inhibits noweb expansion during&nb= sp;export only.


So, is this not possible right now?


It is possible now.  If the :exports header argument doesn't fix you= r problem, come back to the list.

All the best,
Tom

Cheers,
Andreas



Am 07.12.2010 19:37, schrieb Thomas S. Dye:
Aloha Andreas,

Perhaps :noweb tangle will do what you want.

hth,
Tom

On Dec 7, 2010, at 7:38 AM, Andreas Leha wrote:

Hi all,

I have a question about exporting source code blocks.  Say, I have
several modules (mod1, mod2), that build a bigger part (part1) of my
program, e.g.:


#+srcname: mod1
#+begin_src R :tangle no :export cod= e
  print("mod1")
#+end_src

#+srcname: mod2
#+begin_src R :tangle no :export cod= e
  print("mod2")
#+end_src

#+srcname: part1
#+begin_src R :noweb yes :tangle yes= :export code :session *R*
  <<mod1>>
=
  <<mod2>>
=
#+end_src


Now during the tangling I would like to tangle just the full part1 -
with noweb links being expanded.  Also during execution the noweb links
should be expanded.  This is not= a problem.

But at the same time, during the export I'd like to export all three
code snippets, but I'd prefer the noweb links not to be expanded.  Is
that possible?

Thanks in advance,
Andreas

_____________________________________= __________
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://list= s.gnu.org/mailman/listinfo/emacs-orgmode


_______________________________________= ________
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://list= s.gnu.org/mailman/listinfo/emacs-orgmode

--
Andreas Leha

Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://ww= w.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http:/= /www.ams.med.uni-goettingen.de/amsneu/leha-en.html


_______________________________________________
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://list= s.gnu.org/mailman/listinfo/emacs-orgmode


--=20
Andreas Leha

Universitätsmedizin Göttingen
Abteilung Medizinische Statistik
Humboldtallee 32
37073 Göttingen

Tel: +49 (0)551 39-10710
Fax: +49 (0)551 39-4995

http://ww=
w.ams.med.uni-goettingen.de/amsneu/leha.html



University Medical Center Göttingen
Department for Medical Statistics
Humboldtallee 32
37073 Göttingen
Germany

Phone: +49 (0) 551 39-10710
Fax: +49 (0) 551 39-4995

http:/=
/www.ams.med.uni-goettingen.de/amsneu/leha-en.html
    


_______________________________________________
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmod=
e
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