From mboxrd@z Thu Jan 1 00:00:00 1970 From: "Tyler Smith" Subject: Bug: R src blocks fail to produce link to graphics file [9.3 org-plus-contrib-20200127] Date: Mon, 27 Jan 2020 11:13:20 -0500 Message-ID: <38232967-8656-40be-89de-30a7fd180838@www.fastmail.com> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:470:142:3::10]:57610) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iw71r-0008HB-RR for emacs-orgmode@gnu.org; Mon, 27 Jan 2020 11:14:25 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iw71p-0001b9-TC for emacs-orgmode@gnu.org; Mon, 27 Jan 2020 11:14:23 -0500 Received: from out3-smtp.messagingengine.com ([66.111.4.27]:60459) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1iw71p-0001WS-KC for emacs-orgmode@gnu.org; Mon, 27 Jan 2020 11:14:21 -0500 Received: from compute4.internal (compute4.nyi.internal [10.202.2.44]) by mailout.nyi.internal (Postfix) with ESMTP id D604721FFC for ; Mon, 27 Jan 2020 11:14:17 -0500 (EST) List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane-mx.org@gnu.org Sender: "Emacs-orgmode" To: Emacs Org-Mode Help To reproduce: 1. Start from `emacs -Q` 2. open the following org file: ``` #+BEGIN_SRC elisp setup (require 'package) (setq package-load-list '((org-plus-contrib t) (ess t) (julia-mode t))) (package-initialize) (require 'org) (require 'ess) (org-babel-do-load-languages 'org-babel-load-languages '((emacs-lisp . t) (R . t) (shell . t))) #+END_SRC #+RESULTS: #+begin_src R :results graphics :file test.jpg plot (1:10) #+end_src ``` 3. Evaluate the first code block (C-c C-c) to load ess and setup babel to evaluate R code blocks 4. Evaluate the second code block. What I expect: A `#+RESULTS:` block is inserted, with a link to the file test.jpg; What happens instead: A message appears in the minibuffer: 'Code block produced no output'. This worked previously. I'm not sure when it broke - sometime in the last two months I think, as I demoed this feature for colleagues in November. Emacs state provided below. Best, Tyler Emacs : GNU Emacs 28.0.50 (build 2, x86_64-pc-linux-gnu, GTK+ Version 3.22.30) of 2020-01-02 Package: Org mode version 9.3 (release_9.3 @ /home/smithty/.emacs.d/elpa/org-plus-contrib-20200127/) current state: ============== (setq org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-link-shell-confirm-function 'yes-or-no-p org-metadown-hook '(org-babel-pop-to-session-maybe) org-clock-out-hook '(org-clock-remove-empty-clock-drawer) org-mode-hook '(org-eldoc-load #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-show-all append local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes) org-archive-hook '(org-attach-archive-delete-maybe) org-confirm-elisp-link-function 'yes-or-no-p org-agenda-before-write-hook '(org-agenda-add-entry-text) org-metaup-hook '(org-babel-load-in-session-maybe) org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn ENTRY)"] org-babel-pre-tangle-hook '(save-buffer) org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-babel-load-languages '((emacs-lisp . t) (R . t) (shell . t)) org-src-lang-modes '(("redis" . redis) ("php" . php) ("arduino" . arduino) ("C" . c) ("C++" . c++) ("asymptote" . asy) ("bash" . sh) ("beamer" . latex) ("calc" . fundamental) ("cpp" . c++) ("ditaa" . artist) ("dot" . fundamental) ("elisp" . emacs-lisp) ("ocaml" . tuareg) ("screen" . shell-script) ("shell" . sh) ("sqlite" . sql)) org-occur-hook '(org-first-headline-recenter) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-speed-command-hook '(org-speed-command-activate org-babel-speed-command-activate) org-confirm-shell-link-function 'yes-or-no-p org-link-parameters '(("attachment" :follow org-attach-open-link :export org-attach-export-link :complete org-attach-complete-link) ("id" :follow org-id-open) ("eww" :follow eww :store org-eww-store-link) ("rmail" :follow org-rmail-open :store org-rmail-store-link) ("mhe" :follow org-mhe-open :store org-mhe-store-link) ("irc" :follow org-irc-visit :store org-irc-store-link :export org-irc-export) ("info" :follow org-info-open :export org-info-export :store org-info-store-link) ("gnus" :follow org-gnus-open :store org-gnus-store-link) ("docview" :follow org-docview-open :export org-docview-export :store org-docview-store-link) ("bibtex" :follow org-bibtex-open :store org-bibtex-store-link) ("bbdb" :follow org-bbdb-open :export org-bbdb-export :complete org-bbdb-complete-link :store org-bbdb-store-link) ("w3m" :store org-w3m-store-link) ("file+sys") ("file+emacs") ("shell" :follow org-link--open-shell) ("news" :follow #[257 "\301\300\302Q!\207" ["news" browse-url ":"] 5 "\n\n(fn URL)"]) ("mailto" :follow #[257 "\301\300\302Q!\207" ["mailto" browse-url ":"] 5 "\n\n(fn URL)"]) ("https" :follow #[257 "\301\300\302Q!\207" ["https" browse-url ":"] 5 "\n\n(fn URL)"]) ("http" :follow #[257 "\301\300\302Q!\207" ["http" browse-url ":"] 5 "\n\n(fn URL)"]) ("ftp" :follow #[257 "\301\300\302Q!\207" ["ftp" browse-url ":"] 5 "\n\n(fn URL)"]) ("help" :follow org-link--open-help) ("file" :complete org-link-complete-file) ("elisp" :follow org-link--open-elisp) ("doi" :follow org-link--open-doi)) org-link-elisp-confirm-function 'yes-or-no-p ) -- plantarum.ca