From: Brian Shine <brianshine@mac.com>
To: "Liste-emacs-orgmode@gnu.org" <emacs-orgmode@gnu.org>
Cc: Brian Shine <brianshine@mac.com>
Subject: org-mode R using xtable produces strange output
Date: Mon, 19 Mar 2018 23:44:21 +0000 [thread overview]
Message-ID: <27130615-8997-4101-9888-35829EE3D968@mac.com> (raw)
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I am using xtable to produce summary tables of linear models, specifying the output as latex. If I just run the code in R, I get the correct output. However, the latex output in the org document contains a lot of “|”s. I think this is because the header of the table contains some code to make “p > |t|”, where the vertical lines are to indicate “absolute value of t”. My guess is that when the output is written to the results section, org interprets the “|” signs as an org-table and tries to be helpful by adding more of them to make up the correct number of columns. If I switch off the latex output, and write the xtable to a small .tex file, using xtable.print and then include the file after the code block, the table appears correctly.
I’m using emacs 25.2.
Here’s an example:
Best wishes,
Brian
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#+BEGIN_SRC R :session :exports results :results latex
library(xtable)
examp <- data.frame(x = 1:10, y = 10:1)
print.xtable(xtable(summary(glm(y ~ x, data = examp))))
#+END_SRC
#+RESULTS:
#+BEGIN_EXPORT latex
| % latex table generated in R 3.4.4 by xtable 1.8-2 package | | |
| % Mon Mar 19 23:41:04 2018 | | |
| \begin{table}[ht] | | |
| \centering | | |
| \begin{tabular}{rrrrr} | | |
| \hline | | |
| & Estimate & Std. Error & t value & Pr($>$$ | $t$ | $) \\ |
| \hline | | |
| (Intercept) & 11.0000 & 0.0000 & 10932581685367508.00 & 0.0000 \\ | | |
| x & -1.0000 & 0.0000 & -6166807764706701.00 & 0.0000 \\ | | |
| \hline | | |
| \end{tabular} | | |
| \end{table} | | |
| | | |
#+END_EXPORT
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next reply other threads:[~2018-03-19 23:44 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-03-19 23:44 Brian Shine [this message]
2018-03-20 16:47 ` org-mode R using xtable produces strange output Berry, Charles
2018-03-20 22:40 ` Brian Shine
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