From: Esteban Venialgo <tetumetal@posteo.net>
To: William Denton <william@williamdenton.org>
Cc: emacs-orgmode@gnu.org
Subject: Re: R session error (org-babel)
Date: Wed, 6 Mar 2024 10:58:56 +0000 [thread overview]
Message-ID: <20240306105856.zxa6rs7swpez4a77@amd_server> (raw)
In-Reply-To: <_Jkfyu_SinEMpuWNeI1wP3iSqMaYrUIEFXimSJ6FeBGTKuwPycCt7oDk4eI36otevGGK6alc8Di30Sj9lo5LLIaU73GZBhPBnS5ttmkGksY=@williamdenton.org>
hi Bill,
I tried the =emacs -Q=, and still get the same problem. Before exporting the code, I ran this lisp from the scratch pad:
;; enable language support for R
(org-babel-do-load-languages
'org-babel-load-languages
'((R . t)
(shell . t)
(latex . t)
(emacs-lisp . nil)))
(setq load-path '("~/.emacs.d/lisp/" "/etc/emacs" "/usr/share/emacs/site-lisp" "/usr/share/emacs/site-lisp/auctex" "/usr/share/emacs/site-lisp/auto-complete" "/usr/share/emacs/site-lisp/color-theme" "/usr/share/emacs/site-lisp/company-mode" "/usr/share/emacs/site-lisp/counsel" "/usr/share/emacs/site-lisp/dictionary" "/usr/share/emacs/site-lisp/elpy" "/usr/share/emacs/site-lisp/ess" "/usr/share/emacs/site-lisp/highlight-indentation" "/usr/share/emacs/site-lisp/ivy" "/usr/share/emacs/site-lisp/lua-mode" "/usr/share/emacs/site-lisp/matlab" "/usr/share/emacs/site-lisp/org-mode" "/usr/share/emacs/site-lisp/popup" "/usr/share/emacs/site-lisp/python-mode" "/usr/share/emacs/site-lisp/pyvenv" "/usr/share/emacs/site-lisp/s" "/usr/share/emacs/site-lisp/site-gentoo.d" "/usr/share/emacs/site-lisp/swiper" "/usr/share/emacs/site-lisp/which-key" "/usr/share/emacs/site-lisp/xclip" "/usr/share/emacs/site-lisp/yasnippet" "/usr/share/emacs/site-lisp/color-theme/themes" "/usr/share/emacs/29.2/lisp" "/usr/share/emacs/29.2/lisp/vc" "/usr/share/emacs/29.2/lisp/use-package" "/usr/share/emacs/29.2/lisp/url" "/usr/share/emacs/29.2/lisp/textmodes" "/usr/share/emacs/29.2/lisp/progmodes" "/usr/share/emacs/29.2/lisp/play" "/usr/share/emacs/29.2/lisp/org" "/usr/share/emacs/29.2/lisp/nxml" "/usr/share/emacs/29.2/lisp/net" "/usr/share/emacs/29.2/lisp/mh-e" "/usr/share/emacs/29.2/lisp/mail" "/usr/share/emacs/29.2/lisp/leim" "/usr/share/emacs/29.2/lisp/language" "/usr/share/emacs/29.2/lisp/international" "/usr/share/emacs/29.2/lisp/image" "/usr/share/emacs/29.2/lisp/gnus" "/usr/share/emacs/29.2/lisp/eshell" "/usr/share/emacs/29.2/lisp/erc" "/usr/share/emacs/29.2/lisp/emulation" "/usr/share/emacs/29.2/lisp/emacs-lisp" "/usr/share/emacs/29.2/lisp/cedet" "/usr/share/emacs/29.2/lisp/calendar" "/usr/share/emacs/29.2/lisp/calc" "/usr/share/emacs/29.2/lisp/obsolete"))
btw, what emacs version are you using? and OS? Also, when you exported the code, did you set up org-babel-load-languages to run R?
My system details are:
Gentoo Linux
I tried GNU Emacs 29.2 and 28.2
org-mode version 9.6.17
Thanks for your help,
On 2024-03-06 06:21:10, William Denton wrote:
> On Tuesday, March 5th, 2024 at 09:12, Esteban Venialgo <tetumetal@posteo.net> wrote:
>
> > I'm a newbie with org-babel, but I think I'm facing a bug for R code execution. Basically, I have a simple code for testing:
> >
> > #+begin_src R :session test
> > A = 1
> > #+end_src
> >
> > I get a lisp error when I try to export this code to latex. Also, if I remove the session name "test", the code will run in the second attempt. I'm using Emacs version 28.2 and org-mode version 9.6.17.
>
> I can't help understand the error message, but I did try the R sample and have no problem running it and exporting it. I suspect it might be something about your local setup. Could you try starting with =emacs -Q= and loading in Org and enough else to run the R snippet? How to get started with that is here:
>
> https://orgmode.org/manual/Feedback.html
>
> It doesn't cover getting R working, but we can help with that. I can look for a snippet of code if you need one.
>
> Cheers,
>
> Bill
>
> --
> William Denton
> https://www.miskatonic.org/
> Librarian, artist and licensed private investigator.
> Toronto, Canada
>
>
next prev parent reply other threads:[~2024-03-06 10:56 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-03-05 14:12 R session error (org-babel) Esteban Venialgo
2024-03-06 6:21 ` William Denton
2024-03-06 10:58 ` Esteban Venialgo [this message]
2024-03-07 0:30 ` William Denton
2024-03-19 15:45 ` Esteban Venialgo
2024-03-06 10:42 ` Ihor Radchenko
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